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Structure of the C-terminal domain of human RNF2/RING1B;
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 289 2 M AMMONIUM SULPHATE, 2% PEG 400, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
Crystal Properties Matthews coefficient Solvent content 2.93 57.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.169 α = 90 b = 72.169 β = 90 c = 90.966 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2009-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 27.28 99.4 0.112 28.58 13.2 9884 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.9 0.724 1.67 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 27.28 9884 9415 471 99.2 0.202 0.2 0.2236 0.244 0.274 RANDOM 20.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.17 0.34 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.336 r_dihedral_angle_3_deg 15.845 r_dihedral_angle_4_deg 8.021 r_dihedral_angle_1_deg 6.877 r_scangle_it 3.9 r_scbond_it 2.503 r_angle_refined_deg 1.702 r_mcangle_it 1.648 r_mcbond_it 0.924 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.336 r_dihedral_angle_3_deg 15.845 r_dihedral_angle_4_deg 8.021 r_dihedral_angle_1_deg 6.877 r_scangle_it 3.9 r_scbond_it 2.503 r_angle_refined_deg 1.702 r_mcangle_it 1.648 r_mcbond_it 0.924 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 724 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 25
Software Software Software Name Purpose SBC-Collect data collection SOLVE phasing RESOLVE model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling RESOLVE phasing