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Crystal structure of human insulin-degrading enzyme in complex with amylin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.9 68.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 262.868 α = 90 b = 262.868 β = 90 c = 90.854 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97323 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 50 99.9 0.08 5.7 79043 79043 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.91 2.982 99.2 0.332 7788
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.91 49.69 1 1 79045 75049 3963 99.85 0.1782 0.17579 0.22388 0.2119 RANDOM 56.643
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.123 r_dihedral_angle_3_deg 19.942 r_dihedral_angle_4_deg 19.877 r_dihedral_angle_1_deg 5.984 r_scangle_it 2.832 r_scbond_it 1.607 r_angle_refined_deg 1.406 r_mcangle_it 1.054 r_mcbond_it 0.603 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.123 r_dihedral_angle_3_deg 19.942 r_dihedral_angle_4_deg 19.877 r_dihedral_angle_1_deg 5.984 r_scangle_it 2.832 r_scbond_it 1.607 r_angle_refined_deg 1.406 r_mcangle_it 1.054 r_mcbond_it 0.603 r_nbtor_refined 0.318 r_symmetry_hbond_refined 0.262 r_nbd_refined 0.241 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_refined 0.169 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15807 Nucleic Acid Atoms Solvent Atoms 347 Heterogen Atoms 2
Software Software Software Name Purpose HKL-3000 data collection PHASES phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling