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Discovery of novel inhibitors of PDE10A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O8H PDB ENTRY 2O8H
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 54.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.96 α = 90 b = 120.96 β = 90 c = 83.128 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99 0.061 22.977 49482
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 87.4 0.573 2183
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2O8H 1.7 30 49409 3803 99.05 0.159 0.157 0.1699 0.185 0.1955 RANDOM 24.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -0.41 -0.81 1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.785 r_scangle_it 3.51 r_scbond_it 2.111 r_mcangle_it 1.309 r_angle_refined_deg 1.186 r_angle_other_deg 0.802 r_mcbond_it 0.646 r_symmetry_vdw_other 0.259 r_nbd_other 0.237 r_nbd_refined 0.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.785 r_scangle_it 3.51 r_scbond_it 2.111 r_mcangle_it 1.309 r_angle_refined_deg 1.186 r_angle_other_deg 0.802 r_mcbond_it 0.646 r_symmetry_vdw_other 0.259 r_nbd_other 0.237 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.211 r_xyhbond_nbd_refined 0.167 r_metal_ion_refined 0.151 r_symmetry_vdw_refined 0.149 r_nbtor_other 0.08 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2461 Nucleic Acid Atoms Solvent Atoms 576 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection d*TREK data reduction d*TREK data scaling REFMAC phasing