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Human p38 MAP Kinase in Complex with RL40
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 100 mM MES, 20-30% PEG4000, 50 mM n-BOG, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.35 α = 90 b = 69.83 β = 90 c = 74.42 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH Dynamically bendable mirror 2008-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 99 0.08 15.46 4.91 34184 33826 -3 23.938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 99.8 0.454 5.1 4.95 5048
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 40 34184 33825 846 99 0.196 0.195 0.1937 0.232 0.2274 RANDOM 19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 -0.6 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.773 r_dihedral_angle_4_deg 18.797 r_dihedral_angle_3_deg 14.134 r_dihedral_angle_1_deg 5.5 r_scangle_it 3.654 r_scbond_it 2.365 r_mcangle_it 1.697 r_angle_refined_deg 1.393 r_mcbond_it 1.022 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.773 r_dihedral_angle_4_deg 18.797 r_dihedral_angle_3_deg 14.134 r_dihedral_angle_1_deg 5.5 r_scangle_it 3.654 r_scbond_it 2.365 r_mcangle_it 1.697 r_angle_refined_deg 1.393 r_mcbond_it 1.022 r_nbtor_refined 0.311 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.212 r_symmetry_vdw_refined 0.159 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2708 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 59
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction