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Crystal structure of the complex of Trypanosoma cruzi farnesyl diphosphate synthase with zoledronate, IPP and Mg2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 PEG 4000, 200MM ammonium sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.344 α = 90 b = 58.344 β = 90 c = 390.404 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 65.09 88.4 0.079 7.9 14730
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 44.87 13220 705 83.54 0.22858 0.22858 0.22504 0.2212 0.29476 0.2877 RANDOM 39.518
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 0.6 1.19 -1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.169 r_dihedral_angle_4_deg 14.58 r_dihedral_angle_3_deg 14.228 r_dihedral_angle_1_deg 3.774 r_angle_refined_deg 0.892 r_scangle_it 0.632 r_scbond_it 0.38 r_mcangle_it 0.343 r_nbtor_refined 0.29 r_mcbond_it 0.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.169 r_dihedral_angle_4_deg 14.58 r_dihedral_angle_3_deg 14.228 r_dihedral_angle_1_deg 3.774 r_angle_refined_deg 0.892 r_scangle_it 0.632 r_scbond_it 0.38 r_mcangle_it 0.343 r_nbtor_refined 0.29 r_mcbond_it 0.197 r_nbd_refined 0.159 r_symmetry_vdw_refined 0.132 r_xyhbond_nbd_refined 0.092 r_symmetry_hbond_refined 0.07 r_metal_ion_refined 0.064 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2891 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 38
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling