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Human GST A1-1-GIMF with GSDHN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K3Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 16% PEG mme 5000, 0.1 M HEPES, pH 7.5, and 10% isopropanol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.28 45.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.889 α = 90 b = 114.658 β = 117.76 c = 96.239 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 89.6 0.107 12.649 4.5 97225 97225
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 61.6 0.701 2.6 6649
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1K3Y 2.2 39.92 87709 87709 4385 93.92 0.226 0.226 0.224 0.226 0.279 0.278 RANDOM 45.101
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.05 0.63 -2.2 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.257 r_dihedral_angle_3_deg 15.489 r_dihedral_angle_4_deg 15.271 r_dihedral_angle_1_deg 5.834 r_scangle_it 3.211 r_mcangle_it 2.188 r_scbond_it 2.108 r_mcbond_it 1.322 r_angle_refined_deg 1.3 r_angle_other_deg 0.861
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.257 r_dihedral_angle_3_deg 15.489 r_dihedral_angle_4_deg 15.271 r_dihedral_angle_1_deg 5.834 r_scangle_it 3.211 r_mcangle_it 2.188 r_scbond_it 2.108 r_mcbond_it 1.322 r_angle_refined_deg 1.3 r_angle_other_deg 0.861 r_mcbond_other 0.332 r_chiral_restr 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14241 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 248
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection BALBES phasing