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Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in complex with 5-bromo-2-((1S,3R)-3-carboxycyclohexylamino)benzoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 284 16-20% (w/v) PEG3350, 0.2 M NH4OAc, 0.1 M Bis-Tris pH 6.1-6.7;
complex prepared by overnight soaking in mother liquor
containing 5 mM 5-bromo-2-((1S,3R)-3-carboxycyclohexylamino)benzoic acid, vapor diffusion, hanging drop, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.25 45.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.69 α = 90 b = 64.69 β = 90 c = 160.36 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD SI(111) 2007-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 19.69 99.6 0.059 19.94 69627 -3 26.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.55 99.4 0.377 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.45 19.69 69623 3557 99.7 0.14 0.138 0.174 0.185 0.2177 RANDOM 15.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.995 r_dihedral_angle_4_deg 18.615 r_sphericity_free 14.042 r_dihedral_angle_3_deg 13.867 r_scangle_it 6.753 r_dihedral_angle_1_deg 6.624 r_scbond_it 5.038 r_sphericity_bonded 4.909 r_mcangle_it 3.487 r_mcbond_it 3.046
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.995 r_dihedral_angle_4_deg 18.615 r_sphericity_free 14.042 r_dihedral_angle_3_deg 13.867 r_scangle_it 6.753 r_dihedral_angle_1_deg 6.624 r_scbond_it 5.038 r_sphericity_bonded 4.909 r_mcangle_it 3.487 r_mcbond_it 3.046 r_rigid_bond_restr 2.677 r_angle_refined_deg 2.112 r_mcbond_other 1.105 r_angle_other_deg 1.079 r_chiral_restr 0.51 r_symmetry_hbond_refined 0.39 r_symmetry_vdw_other 0.387 r_symmetry_vdw_refined 0.271 r_nbd_refined 0.266 r_nbd_other 0.23 r_xyhbond_nbd_refined 0.229 r_nbtor_refined 0.195 r_nbtor_other 0.093 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2619 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 40
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction