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Crystal Structure of mouse T-cadherin EC1 EC2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 277 50% saturated ammonium sulfate, 33mM Na citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.65 53.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.716 α = 90 b = 107.716 β = 90 c = 226.698 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9791 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 100 0.67 11.1 34355 34355
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 100 0.273
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2 20 34349 1733 99.96 0.215 0.213 0.2085 0.259 0.2542 RANDOM 29.651
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.18 -0.35 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.917 r_dihedral_angle_4_deg 18.123 r_dihedral_angle_3_deg 16.17 r_dihedral_angle_1_deg 8.538 r_scangle_it 4.819 r_scbond_it 3.059 r_angle_refined_deg 2.064 r_mcangle_it 1.852 r_mcbond_it 1.21 r_symmetry_hbond_refined 0.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.917 r_dihedral_angle_4_deg 18.123 r_dihedral_angle_3_deg 16.17 r_dihedral_angle_1_deg 8.538 r_scangle_it 4.819 r_scbond_it 3.059 r_angle_refined_deg 2.064 r_mcangle_it 1.852 r_mcbond_it 1.21 r_symmetry_hbond_refined 0.369 r_nbtor_refined 0.316 r_symmetry_vdw_refined 0.28 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.142 r_bond_refined_d 0.02 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3356 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing