☰ Navigation Tabs
Structural basis of the activity and substrate specificity of the fluoroacetyl-CoA thioesterase FlK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HNN PDB entry 1HNN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 Tris HCl
PEG 2000mme, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.91 α = 90 b = 71.079 β = 102.62 c = 104.351 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2006-09-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9795 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 100 47256 47256 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.45 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB entry 1HNN 2.35 49.75 2 2 47256 43339 2000 100 0.2 0.19223 0.1899 0.2048 0.24255 0.1968 RANDOM 25.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 1.42 -1.33 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.35 r_dihedral_angle_4_deg 18.666 r_dihedral_angle_3_deg 17.69 r_dihedral_angle_1_deg 11.349 r_scangle_it 5.801 r_scbond_it 3.997 r_mcangle_it 3.429 r_mcbond_it 2.607 r_angle_refined_deg 1.568 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.35 r_dihedral_angle_4_deg 18.666 r_dihedral_angle_3_deg 17.69 r_dihedral_angle_1_deg 11.349 r_scangle_it 5.801 r_scbond_it 3.997 r_mcangle_it 3.429 r_mcbond_it 2.607 r_angle_refined_deg 1.568 r_nbtor_refined 0.304 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.17 r_chiral_restr 0.156 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.079 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8132 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHENIX model building REFMAC refinement DENZO data reduction SCALEPACK data scaling PHENIX phasing