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Denovo X-ray crystal structure determination of H-labeled perdeuterated rubredoxin at 100K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 3.8 M sodium/potassium phosphate, hanging drop
Crystal Properties Matthews coefficient Solvent content 2.07 40.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.789 α = 90 b = 34.415 β = 90 c = 43.041 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR 2008-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 43.073 99.5 0.103 0.103 14 6.2 20908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.16 97.4 0.13 0.13 4.8 4.9 2930
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.1 27.01 20861 1066 99.39 0.129 0.128 0.147 0.1627 RANDOM 8.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.43 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.745 r_dihedral_angle_3_deg 9.608 r_dihedral_angle_1_deg 5.977 r_sphericity_free 5.855 r_scangle_it 5.456 r_sphericity_bonded 3.947 r_scbond_it 3.7 r_mcangle_it 2.669 r_rigid_bond_restr 2.034 r_angle_refined_deg 1.951
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.745 r_dihedral_angle_3_deg 9.608 r_dihedral_angle_1_deg 5.977 r_sphericity_free 5.855 r_scangle_it 5.456 r_sphericity_bonded 3.947 r_scbond_it 3.7 r_mcangle_it 2.669 r_rigid_bond_restr 2.034 r_angle_refined_deg 1.951 r_mcbond_it 1.855 r_mcbond_other 1.842 r_angle_other_deg 0.986 r_chiral_restr 0.121 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 421 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 1
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction