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Crystal structure of DHT-bound androgen receptor in complex with the third motif of steroid receptor coactivator 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 3350, pH 7.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.427 α = 90 b = 66.83 β = 90 c = 72.494 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-06-24 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.00 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 85.3 0.094 17 6.4 18358 17278 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 0.587 1.8 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 16921 1320 95.49 0.19616 0.1928 0.1996 0.24263 0.2462 RANDOM 29.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.39 -1.66 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.871 r_dihedral_angle_4_deg 13.11 r_dihedral_angle_3_deg 12.522 r_sphericity_free 12.235 r_scangle_it 5.028 r_dihedral_angle_1_deg 3.849 r_sphericity_bonded 3.773 r_scbond_it 3.433 r_mcangle_it 2.772 r_rigid_bond_restr 2.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.871 r_dihedral_angle_4_deg 13.11 r_dihedral_angle_3_deg 12.522 r_sphericity_free 12.235 r_scangle_it 5.028 r_dihedral_angle_1_deg 3.849 r_sphericity_bonded 3.773 r_scbond_it 3.433 r_mcangle_it 2.772 r_rigid_bond_restr 2.193 r_mcbond_it 1.61 r_angle_refined_deg 1.396 r_angle_other_deg 0.911 r_mcbond_other 0.559 r_chiral_restr 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2135 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling