☰ Navigation Tabs
The structure of mammalian serine racemase: Evidence for conformational changes upon inhibitor binding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 PEG 3350, 200mM sodium malonate, 50mM MnCl2, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.13 42.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.543 α = 90 b = 84.212 β = 90 c = 70.376 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.98000 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 45.78 97.1 0.094 0.097 16.1 12.45 35305 35305 2 2 18.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 78.9 0.28 0.31 4.5 5.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 45.78 33537 1775 97.06 0.1676 0.1538 0.202 0.1972 RANDOM 23.399
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.268 r_dihedral_angle_4_deg 15.399 r_dihedral_angle_3_deg 14.707 r_scangle_it 7.284 r_dihedral_angle_1_deg 5.75 r_scbond_it 4.755 r_mcangle_it 3.273 r_rigid_bond_restr 2.589 r_mcbond_it 2.073 r_angle_refined_deg 2.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.268 r_dihedral_angle_4_deg 15.399 r_dihedral_angle_3_deg 14.707 r_scangle_it 7.284 r_dihedral_angle_1_deg 5.75 r_scbond_it 4.755 r_mcangle_it 3.273 r_rigid_bond_restr 2.589 r_mcbond_it 2.073 r_angle_refined_deg 2.064 r_chiral_restr 0.154 r_bond_refined_d 0.03 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2427 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 8
Software Software Software Name Purpose DNA data collection SHELXS phasing REFMAC refinement d*TREK data reduction d*TREK data scaling