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crystal structure of bla g 2 complexed with Fab 4C3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7C11 Bla g 2 and 7C11 antibody
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 20% PEG8000, 8% Ethylene glycol, 5mM DTT and 0.2mM CdCl, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.77 67.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.213 α = 90 b = 105.285 β = 132.58 c = 109.154 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99.3 0.068 17.9 3.7 118390 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 94.5 0.491 2.4 3.5 11220
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Bla g 2 and 7C11 antibody 1.8 29.49 114775 3593 99.26 0.17805 0.17729 0.1831 0.20226 0.2094 RANDOM 36.023
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.47 3.61 -1.26 1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.856 r_dihedral_angle_4_deg 16.955 r_dihedral_angle_3_deg 14.932 r_dihedral_angle_1_deg 6.427 r_scangle_it 3.721 r_scbond_it 2.253 r_mcangle_it 1.466 r_angle_refined_deg 1.425 r_mcbond_it 0.764 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.856 r_dihedral_angle_4_deg 16.955 r_dihedral_angle_3_deg 14.932 r_dihedral_angle_1_deg 6.427 r_scangle_it 3.721 r_scbond_it 2.253 r_mcangle_it 1.466 r_angle_refined_deg 1.425 r_mcbond_it 0.764 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5795 Nucleic Acid Atoms Solvent Atoms 870 Heterogen Atoms 98
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement HKL-3000 data reduction SCALEPACK data scaling