3LLO

Crystal structure of the STAS domain of motor protein prestin (anion transporter SLC26A5)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.52931.8 M Ammonium sulfate, 4.5% (v/v) PEG 400, 0.1% (w/v) octyl-beta-D-glucopyranoside, 0.09 M MES, pH 6.5, VAPOR DIFFUSION, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
2.3347.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.59α = 90
b = 61.59β = 90
c = 67.13γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102009-09-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.93ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5728.40899.30.0550.0558.511.3208602086021.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.571.6597.60.4960.4963.910.12931

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.57252083120831106299.1430.1560.1560.1540.196RANDOM25.149
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.320.160.32-0.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.989
r_dihedral_angle_4_deg13.635
r_dihedral_angle_3_deg11.167
r_scangle_it8.556
r_dihedral_angle_1_deg5.761
r_scbond_it5.736
r_mcangle_it3.902
r_rigid_bond_restr2.949
r_mcbond_it2.551
r_angle_refined_deg2.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.989
r_dihedral_angle_4_deg13.635
r_dihedral_angle_3_deg11.167
r_scangle_it8.556
r_dihedral_angle_1_deg5.761
r_scbond_it5.736
r_mcangle_it3.902
r_rigid_bond_restr2.949
r_mcbond_it2.551
r_angle_refined_deg2.108
r_chiral_restr0.165
r_bond_refined_d0.027
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1031
Nucleic Acid Atoms
Solvent Atoms103
Heterogen Atoms10

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
SHELXphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
MOSFLMdata reduction
SHELXDphasing