☰ Navigation Tabs
Crystal structure of Protein with unknown function which belongs to Pfam DUF971 family (AFE_2189) from Acidithiobacillus ferrooxidans ATCC 23270 at 1.93 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 293 0.3000M magnesium chloride, 22.0000% polyethylene glycol 8000, 0.1M TRIS pH 8.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.943 α = 90 b = 82.943 β = 90 c = 32.806 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2010-01-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97876 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 41.471 98.7 0.146 11.86 7.09 8966 -3 24.109
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2 99.7 1.211 1.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.93 41.471 8946 427 98.85 0.197 0.196 0.1997 0.221 0.2182 RANDOM 24.957
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.56 -1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.569 r_dihedral_angle_4_deg 14 r_dihedral_angle_3_deg 13.905 r_scangle_it 8.597 r_dihedral_angle_1_deg 6.638 r_scbond_it 5.649 r_mcangle_it 3.725 r_mcbond_it 2.128 r_angle_refined_deg 1.701 r_angle_other_deg 1.055
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.569 r_dihedral_angle_4_deg 14 r_dihedral_angle_3_deg 13.905 r_scangle_it 8.597 r_dihedral_angle_1_deg 6.638 r_scbond_it 5.649 r_mcangle_it 3.725 r_mcbond_it 2.128 r_angle_refined_deg 1.701 r_angle_other_deg 1.055 r_mcbond_other 0.52 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 707 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing