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Crystal structure of RpfF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 200mM potassium thiocyanate, 20% (w/v) PEG 3350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.23 61.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.768 α = 90 b = 112.342 β = 90 c = 119.616 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9795 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 97.3 117918 111882 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30 117918 111882 5925 97.34 0.226 0.225 0.243 0.2889 RANDOM 21.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.25 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.771 r_dihedral_angle_4_deg 13.619 r_dihedral_angle_3_deg 10.497 r_dihedral_angle_1_deg 3.965 r_scangle_it 0.644 r_angle_refined_deg 0.488 r_scbond_it 0.372 r_mcangle_it 0.25 r_mcbond_it 0.129 r_chiral_restr 0.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.771 r_dihedral_angle_4_deg 13.619 r_dihedral_angle_3_deg 10.497 r_dihedral_angle_1_deg 3.965 r_scangle_it 0.644 r_angle_refined_deg 0.488 r_scbond_it 0.372 r_mcangle_it 0.25 r_mcbond_it 0.129 r_chiral_restr 0.034 r_bond_refined_d 0.002 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6142 Nucleic Acid Atoms Solvent Atoms 751 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection SHELXD phasing