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Crystal Structure of CUGBP1 RRM1/2-RNA Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2 M ammonium acetate, 45% MPD, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.29 46.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.548 α = 90 b = 70.012 β = 90 c = 132.209 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-09-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97930, 0.97890, 0.96360 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 66.082 99.76 0.036 36.7 3.8 36250 18231 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 99.1 0.369 3.6 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 20 18231 18187 986 99.76 0.20562 0.20562 0.20362 0.2032 0.24451 0.2337 RANDOM 28.604
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.2 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.787 r_dihedral_angle_4_deg 20.108 r_dihedral_angle_3_deg 16.078 r_sphericity_free 5.715 r_dihedral_angle_1_deg 5.256 r_scangle_it 4.102 r_scbond_it 2.66 r_sphericity_bonded 2.046 r_mcangle_it 1.719 r_rigid_bond_restr 1.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.787 r_dihedral_angle_4_deg 20.108 r_dihedral_angle_3_deg 16.078 r_sphericity_free 5.715 r_dihedral_angle_1_deg 5.256 r_scangle_it 4.102 r_scbond_it 2.66 r_sphericity_bonded 2.046 r_mcangle_it 1.719 r_rigid_bond_restr 1.299 r_angle_refined_deg 1.257 r_angle_other_deg 1.121 r_mcbond_it 0.977 r_mcbond_other 0.322 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1375 Nucleic Acid Atoms 107 Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling