3OXH

Mycobacterium tuberculosis kinase inhibitor homolog RV0577


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.752911.1M NACITRATE, 4% BUTANOL, MES, PH 6.75, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
Crystal Properties
Matthews coefficientSolvent content
2.0339.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.597α = 90
b = 81.981β = 90
c = 36.037γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-02-09MSINGLE WAVELENGTH
21x-rayM
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1
2SYNCHROTRONALS BEAMLINE 8.3.10.97949, 0.97965, 1.00801ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.752099.70.0730.07323.12572518618.88
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.751.8198.90.560.562.045.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.752025186123099.70.1780.1760.212RANDOM22.874
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.310.55-0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.396
r_dihedral_angle_4_deg14.667
r_dihedral_angle_3_deg13.064
r_dihedral_angle_1_deg6.132
r_scangle_it2.96
r_scbond_it2.106
r_angle_refined_deg1.35
r_mcangle_it1.306
r_mcbond_it0.988
r_angle_other_deg0.778
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.396
r_dihedral_angle_4_deg14.667
r_dihedral_angle_3_deg13.064
r_dihedral_angle_1_deg6.132
r_scangle_it2.96
r_scbond_it2.106
r_angle_refined_deg1.35
r_mcangle_it1.306
r_mcbond_it0.988
r_angle_other_deg0.778
r_metal_ion_refined0.532
r_symmetry_vdw_other0.242
r_nbd_refined0.207
r_symmetry_vdw_refined0.207
r_xyhbond_nbd_refined0.198
r_mcbond_other0.196
r_nbd_other0.184
r_nbtor_refined0.177
r_symmetry_hbond_refined0.129
r_chiral_restr0.086
r_nbtor_other0.086
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1850
Nucleic Acid Atoms
Solvent Atoms271
Heterogen Atoms23

Software

Software
Software NamePurpose
SOLVEphasing
REFMACrefinement
ADSCdata collection
HKL-2000data scaling