☰ Navigation Tabs
Haloferax volcanii Malate Synthase Magnesium/Glyoxylate Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.4 295 PEG 4500, glycerol, 2M KCl,MgCl2, pH 4.4, supplemented with 0.1M glyoxylate, 0.1M MgCl2, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.41 63.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.023 α = 90 b = 155.023 β = 90 c = 141.787 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU R-axis IV, confocal optics 2010-07-21 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 98.1 0.096 17.8 3.4 22203
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 90 0.453 3.2 2020
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.51 20 22200 1109 98.78 0.1948 0.1921 0.1939 0.2476 0.2414 RANDOM 58.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.33 0.66 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.922 r_dihedral_angle_3_deg 18.86 r_dihedral_angle_4_deg 15.231 r_dihedral_angle_1_deg 6.92 r_scangle_it 4.931 r_scbond_it 3.076 r_angle_refined_deg 2.068 r_mcangle_it 2.009 r_mcbond_it 1.08 r_chiral_restr 0.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.922 r_dihedral_angle_3_deg 18.86 r_dihedral_angle_4_deg 15.231 r_dihedral_angle_1_deg 6.92 r_scangle_it 4.931 r_scbond_it 3.076 r_angle_refined_deg 2.068 r_mcangle_it 2.009 r_mcbond_it 1.08 r_chiral_restr 0.121 r_bond_refined_d 0.017 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2729 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 19
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction