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Strontium bound to the sequence d(CCGGCGCCGG)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GOJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 SrCl2, MPD, NaCacodylate , pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.32 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.89 α = 90 b = 25.001 β = 110.01 c = 37.044 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD SAPPHIRE CCD multi-graded optics 2007-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.879 14.866 78.55 0.045 2.1 4705 3706 1 1 27.446
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.879 1.927
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3GOJ 1.879 14.86 3531 175 78.55 0.2544 0.2508 0.2455 0.32701 0.3179 RANDOM 27.446
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.38 0.31 3.36 0.23
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.016 r_angle_refined_deg 3.666 r_scbond_it 3.007 r_symmetry_hbond_refined 0.434 r_xyhbond_nbd_refined 0.389 r_nbtor_refined 0.344 r_nbd_refined 0.259 r_metal_ion_refined 0.172 r_chiral_restr 0.15 r_symmetry_vdw_refined 0.106
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.016 r_angle_refined_deg 3.666 r_scbond_it 3.007 r_symmetry_hbond_refined 0.434 r_xyhbond_nbd_refined 0.389 r_nbtor_refined 0.344 r_nbd_refined 0.259 r_metal_ion_refined 0.172 r_chiral_restr 0.15 r_symmetry_vdw_refined 0.106 r_bond_refined_d 0.021 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 404 Solvent Atoms 57 Heterogen Atoms 2
Software Software Software Name Purpose CrysalisPro data collection MOLREP phasing REFMAC refinement CrysalisPro data reduction CrysalisPro data scaling