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Triclinic form of Human C-Reactive Protein in complex with Zinc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LJ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 289 12% PEG 4000, 0.1M Tris-Hcl, 0.2M MgCl2, 0.05M LiCl, pH 8.0, VAPOR DIFFUSION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.41 48.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.3 α = 79.9 b = 96.4 β = 77.1 c = 160.4 γ = 69.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 20 92.8 0.062 9.7 1.94 275048 275047 -3 29.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.05 91.7 0.321 2.96 1.85 19869
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1LJ7 1.98 19.92 -3 261507 261507 13541 100 0.19156 0.17857 0.17564 0.1753 0.23551 0.2343 RANDOM 23.649
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 -0.34 0.24 -0.16 0.27 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.541 r_dihedral_angle_4_deg 24.998 r_dihedral_angle_3_deg 16.213 r_dihedral_angle_1_deg 6.843 r_scangle_it 5.249 r_scbond_it 3.448 r_mcangle_it 2.248 r_angle_refined_deg 1.938 r_mcbond_it 1.276 r_chiral_restr 0.168
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.541 r_dihedral_angle_4_deg 24.998 r_dihedral_angle_3_deg 16.213 r_dihedral_angle_1_deg 6.843 r_scangle_it 5.249 r_scbond_it 3.448 r_mcangle_it 2.248 r_angle_refined_deg 1.938 r_mcbond_it 1.276 r_chiral_restr 0.168 r_bond_refined_d 0.024 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 32640 Nucleic Acid Atoms Solvent Atoms 3011 Heterogen Atoms 45
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement XDS data reduction XSCALE data scaling