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Crystal Structure of Human MC-HSP90 in C2221 Space Group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CGE PDB ENTRY 2CGE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 2.5M ammonium sulfate, 0.1M Tris-sodium citrate, 0.1mM cis-dichloro(ethylenediamine)platinum (II), pH 5.4-5.8, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.45 64.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.702 α = 90 b = 304.553 β = 90 c = 87.624 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 99.6 0.058 17.9 4.3 43809 43634 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 99.3 0.451 3.5 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CGE 3 30 41749 41365 2185 99.18 0.21094 0.2086 0.2113 0.25163 0.2103 RANDOM 104.496
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -2.4 2.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.161 r_dihedral_angle_4_deg 22.224 r_dihedral_angle_3_deg 21.599 r_dihedral_angle_1_deg 6.332 r_scangle_it 2.645 r_scbond_it 1.478 r_angle_refined_deg 1.405 r_mcangle_it 1.109 r_mcbond_it 0.564 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.161 r_dihedral_angle_4_deg 22.224 r_dihedral_angle_3_deg 21.599 r_dihedral_angle_1_deg 6.332 r_scangle_it 2.645 r_scbond_it 1.478 r_angle_refined_deg 1.405 r_mcangle_it 1.109 r_mcbond_it 0.564 r_chiral_restr 0.104 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9197 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 15
Software Software Software Name Purpose MOLREP phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC refinement