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Putative solute-binding protein from Yersinia pestis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 2.8 M sodium acetate trihydrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.69 66.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.036 α = 90 b = 171.322 β = 90 c = 128.842 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 43.1 100 0.121 8.3 7.3 64629 64629 56.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.51 99.9 0.804 2.32 6.8 3185
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.43 43.1 64459 64459 3265 97.88 0.1745 0.1745 0.1728 0.1739 0.208 0.2054 RANDOM 43.9043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -2.01 2.35
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 39.568 f_dihedral_angle_4_deg 21.944 f_dihedral_angle_3_deg 17.145 f_dihedral_angle_1_deg 6.208 f_scangle_it 4.734 f_scbond_it 2.925 f_mcangle_it 1.929 f_angle_refined_deg 1.634 f_mcbond_it 0.983 f_angle_other_deg 0.93
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 39.568 f_dihedral_angle_4_deg 21.944 f_dihedral_angle_3_deg 17.145 f_dihedral_angle_1_deg 6.208 f_scangle_it 4.734 f_scbond_it 2.925 f_mcangle_it 1.929 f_angle_refined_deg 1.634 f_mcbond_it 0.983 f_angle_other_deg 0.93 f_mcbond_other 0.179 f_chiral_restr 0.095 f_bond_refined_d 0.02 f_gen_planes_refined 0.008 f_bond_other_d 0.001 f_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7617 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing PHENIX refinement