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Apis mellifera OBP14, native apo-protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RZS PDB ENTRY 3RZS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.8 293 1.8-1.9 M tri-sodium citrate, 25 mM CHES, pH 9.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.96 37.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.41 α = 90 b = 37.99 β = 90 c = 86.38 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2011-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 45.1 98 0.045 18.7 5.3 37980 37980 10.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.18 86.1 0.5 2.1 3.1 2422
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3RZS 1.15 43.19 36080 36080 1900 98.01 0.15602 0.15602 0.15484 0.1832 0.17797 0.1914 RANDOM 8.414
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.62 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.52 r_dihedral_angle_4_deg 11.59 r_dihedral_angle_3_deg 11.282 r_dihedral_angle_1_deg 5.165 r_scangle_it 4.68 r_scbond_it 3.043 r_mcangle_it 1.938 r_angle_refined_deg 1.481 r_mcbond_it 1.196 r_rigid_bond_restr 1.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.52 r_dihedral_angle_4_deg 11.59 r_dihedral_angle_3_deg 11.282 r_dihedral_angle_1_deg 5.165 r_scangle_it 4.68 r_scbond_it 3.043 r_mcangle_it 1.938 r_angle_refined_deg 1.481 r_mcbond_it 1.196 r_rigid_bond_restr 1.132 r_angle_other_deg 0.939 r_mcbond_other 0.385 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 943 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling