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ABH2 cross-linked to undamaged dsDNA-2 with cofactors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 277 12% PEG 8000, 100mM sodium chloride, 50mM Magnesium chloride, 100mM cacodylate, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.87 57.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.968 α = 90 b = 60.61 β = 90.52 c = 65.588 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9795 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 99.7 0.04 30 7.3 52281
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 99.5 0.666 2 6.4 5173
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 20 37531 1996 99.5 0.19922 0.19707 0.1949 0.23796 0.2355 RANDOM 32.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 -0.06 0.78 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.473 r_dihedral_angle_4_deg 17.12 r_dihedral_angle_3_deg 13.455 r_dihedral_angle_1_deg 6.619 r_sphericity_free 5.097 r_sphericity_bonded 4.454 r_scangle_it 3.366 r_scbond_it 2.421 r_rigid_bond_restr 2.038 r_mcangle_it 1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.473 r_dihedral_angle_4_deg 17.12 r_dihedral_angle_3_deg 13.455 r_dihedral_angle_1_deg 6.619 r_sphericity_free 5.097 r_sphericity_bonded 4.454 r_scangle_it 3.366 r_scbond_it 2.421 r_rigid_bond_restr 2.038 r_mcangle_it 1.87 r_angle_refined_deg 1.487 r_mcbond_it 1.205 r_nbtor_refined 0.302 r_nbd_refined 0.19 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.153 r_symmetry_vdw_refined 0.122 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1636 Nucleic Acid Atoms 566 Solvent Atoms 338 Heterogen Atoms 33
Software Software Software Name Purpose ADSC data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling