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Crystal structure of a mitochondrial ornithine carbamoyltransferase from Coccidioides immitis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 CoimA.01230.a.MB1 PW30353 at 24.3 mg/mL against JCSG+ screen condition B2, 0.2 M PEG 3350, 0.2 M NaSCN with 20% ethylene glycol as cryo-protection reagent, crystal tracking ID 218420b2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.61 52.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.36 α = 90 b = 150.36 β = 90 c = 92.11 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-01-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.6 0.08 18.54 4.9 29879 29749 -3 59.269
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 99.9 0.608 2.66 5 2141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 50 29661 1504 99.29 0.1951 0.1927 0.2387 0.1952 RANDOM 55.2221
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.1 0.21 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.228 r_dihedral_angle_4_deg 18.031 r_dihedral_angle_3_deg 17.408 r_dihedral_angle_1_deg 5.342 r_scangle_it 1.833 r_angle_refined_deg 1.309 r_scbond_it 1.125 r_mcangle_it 0.856 r_mcbond_it 0.453 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.228 r_dihedral_angle_4_deg 18.031 r_dihedral_angle_3_deg 17.408 r_dihedral_angle_1_deg 5.342 r_scangle_it 1.833 r_angle_refined_deg 1.309 r_scbond_it 1.125 r_mcangle_it 0.856 r_mcbond_it 0.453 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6928 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 6
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction