☰ Navigation Tabs
IspH:HMBPP (substrate) structure of the T167C mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F7T PDB ENTRY 3F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 200 mM lithium sulfate, 25% PEG3350, 100 mM Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.54 α = 90 b = 80.85 β = 90 c = 112.56 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.3 0.123 9.1 37749 37485 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 97.2 0.544 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3F7T 2.1 10 37101 35246 1855 100 0.21801 0.21487 0.2182 0.27753 0.2724 RANDOM 30.758
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 -3.28 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.681 r_dihedral_angle_4_deg 20.467 r_dihedral_angle_3_deg 16.588 r_dihedral_angle_1_deg 6.25 r_scangle_it 4.331 r_scbond_it 2.845 r_angle_refined_deg 1.871 r_mcangle_it 1.665 r_mcbond_it 0.968 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.681 r_dihedral_angle_4_deg 20.467 r_dihedral_angle_3_deg 16.588 r_dihedral_angle_1_deg 6.25 r_scangle_it 4.331 r_scbond_it 2.845 r_angle_refined_deg 1.871 r_mcangle_it 1.665 r_mcbond_it 0.968 r_chiral_restr 0.126 r_bond_refined_d 0.021 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4771 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 44
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing