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Structure of Bacillus subtilis HmoB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8.5 293 28% PEG 4000, 0.2M Magnesium chloride, 0.1M Tris-Hcl pH8.5, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.03 39.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.799 α = 90 b = 64.799 β = 90 c = 392.591 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2010-06-14 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 210 2010-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.97865 SPring-8 BL41XU 2 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.97904 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 50 100 34657 34657
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 48.74 34446 1736 99.84 0.1986 0.1959 0.1965 0.251 0.2492 RANDOM 42.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.02 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.603 r_dihedral_angle_4_deg 20.68 r_dihedral_angle_3_deg 15.848 r_dihedral_angle_1_deg 7.156 r_scangle_it 4.065 r_scbond_it 2.664 r_mcangle_it 1.656 r_angle_refined_deg 1.541 r_mcbond_it 1.031 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.603 r_dihedral_angle_4_deg 20.68 r_dihedral_angle_3_deg 15.848 r_dihedral_angle_1_deg 7.156 r_scangle_it 4.065 r_scbond_it 2.664 r_mcangle_it 1.656 r_angle_refined_deg 1.541 r_mcbond_it 1.031 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.298 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.219 r_xyhbond_nbd_refined 0.199 r_chiral_restr 0.134 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3434 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection SOLVE phasing