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Designed protein KE59 R1 7/10H with G130S mutation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UYC PDB ENTRY 3UYC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 20% PEG3350, 0.2 M sodium sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.529 α = 90 b = 61.529 β = 90 c = 119.961 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9197 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 39.987 99.8 0.06 0.067 23.5 6 90264 90084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 100 0.578 0.534 2.1 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UYC 1.45 39.987 85529 4510 99.56 0.16478 0.16276 0.1686 0.2035 0.2072 RANDOM 20.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.15 -0.3 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.236 r_dihedral_angle_4_deg 16.005 r_dihedral_angle_3_deg 12.606 r_scangle_it 8.771 r_scbond_it 6.198 r_dihedral_angle_1_deg 5.421 r_mcangle_it 3.929 r_rigid_bond_restr 2.984 r_mcbond_it 2.715 r_angle_refined_deg 2.216
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.236 r_dihedral_angle_4_deg 16.005 r_dihedral_angle_3_deg 12.606 r_scangle_it 8.771 r_scbond_it 6.198 r_dihedral_angle_1_deg 5.421 r_mcangle_it 3.929 r_rigid_bond_restr 2.984 r_mcbond_it 2.715 r_angle_refined_deg 2.216 r_chiral_restr 0.172 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3882 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 27
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling