☰ Navigation Tabs
Crystal structure of RsbX in complex with magnesium in space group P21
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W45 PDB ENTRY 3W45
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 298 20% PEG 1000, 100mM Tris-HCl, 5mM MgCl2, pH 8.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.87 34.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.176 α = 90 b = 68.248 β = 108.5 c = 38.714 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KIRKPATRICK-BAEZ MIRRORS 2008-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 50 98.3 0.047 27.9 3.1 30818 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.47 99.9 0.311 3.4 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3W45 1.42 30 30566 1541 99.22 0.1887 0.1873 0.1861 0.2139 0.2135 RANDOM 15.9389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.53 -0.46 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.973 r_dihedral_angle_3_deg 14.087 r_dihedral_angle_4_deg 9.92 r_dihedral_angle_1_deg 6.244 r_scangle_it 4.675 r_scbond_it 2.762 r_mcangle_it 1.764 r_angle_refined_deg 1.418 r_mcbond_it 0.903 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.973 r_dihedral_angle_3_deg 14.087 r_dihedral_angle_4_deg 9.92 r_dihedral_angle_1_deg 6.244 r_scangle_it 4.675 r_scbond_it 2.762 r_mcangle_it 1.764 r_angle_refined_deg 1.418 r_mcbond_it 0.903 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1554 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction BSS data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing