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Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WDC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.2M ammonium acetate, 20% polyethylene glycol 3350, 0.025M magnesium formate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.76 30.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.02 α = 90 b = 58.86 β = 90 c = 63.99 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL PSI PILATUS 6M 2011-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 50 23876
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3WDC 1.44 30 22599 1217 99.45 0.1293 0.1267 0.1232 0.1767 0.172 RANDOM 13.8438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 0.01 0.57
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.028 r_dihedral_angle_2_deg 38.601 r_dihedral_angle_4_deg 18.606 r_sphericity_bonded 16.151 r_dihedral_angle_3_deg 13.892 r_dihedral_angle_1_deg 4.655 r_rigid_bond_restr 2.549 r_angle_refined_deg 1.818 r_chiral_restr 0.101 r_bond_refined_d 0.014
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.028 r_dihedral_angle_2_deg 38.601 r_dihedral_angle_4_deg 18.606 r_sphericity_bonded 16.151 r_dihedral_angle_3_deg 13.892 r_dihedral_angle_1_deg 4.655 r_rigid_bond_restr 2.549 r_angle_refined_deg 1.818 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1218 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 4
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling