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Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Sample TURNIP CRINKLE VIRUS
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING, ... VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 5121 Reported Resolution (Å) 17 Resolution Method Other Details SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-1864.(DEPOSITION ID: 7818). Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details METHOD--RIGID-BODY FIT REFINEMENT PROTOCOL--X-RAY
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 15
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI F20 Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 50000 Calibrated Magnification 52911 Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version RECONSTRUCTION SPIDER
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE-FLIPPING EACH PARTICLE