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Crystal Structure of the first bromodomain of human BRD4 in complex with I-BET151(GSK1210151A)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OSS PDB ENTRY 2OSS
Crystallization Crystal Properties Matthews coefficient Solvent content 2.25 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.894 α = 90 b = 59.542 β = 90 c = 109.195 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 41.89 97.5 0.08 10.7 7.1 44656 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 95.9 0.4 3.6 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2OSS 1.5 109.11 41331 2192 97.45 0.16422 0.16233 0.1723 0.20095 0.2091 RANDOM 15.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.32 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.14 r_dihedral_angle_3_deg 10.654 r_dihedral_angle_4_deg 9.907 r_dihedral_angle_1_deg 4.162 r_scangle_it 2.478 r_scbond_it 1.613 r_angle_other_deg 1.242 r_mcangle_it 1.218 r_angle_refined_deg 1.06 r_mcbond_it 0.687
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.14 r_dihedral_angle_3_deg 10.654 r_dihedral_angle_4_deg 9.907 r_dihedral_angle_1_deg 4.162 r_scangle_it 2.478 r_scbond_it 1.613 r_angle_other_deg 1.242 r_mcangle_it 1.218 r_angle_refined_deg 1.06 r_mcbond_it 0.687 r_rigid_bond_restr 0.536 r_mcbond_other 0.24 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2113 Nucleic Acid Atoms Solvent Atoms 412 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling PHASER phasing