☰ Navigation Tabs
X-ray structures of oxazole hydroxamate EcMetAp-Mn complexes
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2MAT PDB ENTRY 2MAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 VAPOUR DIFFUSION 17 TO 25 % PEG 8000, HEPES, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.05 40.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.23 α = 90 b = 61.25 β = 107.62 c = 77.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 37.06 98.3 0.09 7.1 4 80700 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.54 97.3 0.28 3.4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2MAT 1.46 74.11 76648 4031 98.08 0.16234 0.1592 0.1573 0.22251 0.2184 RANDOM 19.767
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.38 0.86 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.811 r_dihedral_angle_4_deg 14.858 r_dihedral_angle_3_deg 12.237 r_dihedral_angle_1_deg 6.881 r_scangle_it 6.737 r_scbond_it 4.79 r_mcangle_it 3.007 r_rigid_bond_restr 2.724 r_mcbond_it 2.247 r_angle_refined_deg 2.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.811 r_dihedral_angle_4_deg 14.858 r_dihedral_angle_3_deg 12.237 r_dihedral_angle_1_deg 6.881 r_scangle_it 6.737 r_scbond_it 4.79 r_mcangle_it 3.007 r_rigid_bond_restr 2.724 r_mcbond_it 2.247 r_angle_refined_deg 2.054 r_chiral_restr 0.248 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4070 Nucleic Acid Atoms Solvent Atoms 844 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing