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X-ray structures of oxazole hydroxamate EcMetAp-Mn complexes
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2MAT PDB ENTRY 2MAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.09 41.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.35 α = 90 b = 62.91 β = 109.4 c = 52.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 31.25 97.9 0.08 8.5 3.9 38522 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.57 96.2 0.22 4.7 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2MAT 1.46 31.25 36995 1982 93.35 0.15669 0.15296 0.1517 0.22623 0.2244 RANDOM 16.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.648 r_dihedral_angle_4_deg 22.037 r_dihedral_angle_3_deg 12.108 r_scangle_it 6.849 r_dihedral_angle_1_deg 6.625 r_scbond_it 4.846 r_mcangle_it 2.957 r_rigid_bond_restr 2.566 r_mcbond_it 2.146 r_angle_refined_deg 2.049
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.648 r_dihedral_angle_4_deg 22.037 r_dihedral_angle_3_deg 12.108 r_scangle_it 6.849 r_dihedral_angle_1_deg 6.625 r_scbond_it 4.846 r_mcangle_it 2.957 r_rigid_bond_restr 2.566 r_mcbond_it 2.146 r_angle_refined_deg 2.049 r_chiral_restr 0.144 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2019 Nucleic Acid Atoms Solvent Atoms 547 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling