X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.50.25 M NH4CL, 20% W/V PEG 3350, 0.1 M MES PH 6.5, 5 MM TCEP
Crystal Properties
Matthews coefficientSolvent content
2.449.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.721α = 103.45
b = 60.002β = 102.59
c = 78.666γ = 98.59
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2009-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I24DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75095.80.0614.43.781218219.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7691.80.484.93.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE1.6973.8281218426793.590.176760.175160.20756RANDOM21.241
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.09-1.090.55-0.28-0.42-1.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.237
r_dihedral_angle_4_deg15.481
r_dihedral_angle_3_deg12.289
r_dihedral_angle_1_deg5.876
r_angle_refined_deg1.23
r_nbtor_refined0.313
r_nbd_refined0.203
r_symmetry_vdw_refined0.198
r_symmetry_hbond_refined0.154
r_xyhbond_nbd_refined0.105
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.237
r_dihedral_angle_4_deg15.481
r_dihedral_angle_3_deg12.289
r_dihedral_angle_1_deg5.876
r_angle_refined_deg1.23
r_nbtor_refined0.313
r_nbd_refined0.203
r_symmetry_vdw_refined0.198
r_symmetry_hbond_refined0.154
r_xyhbond_nbd_refined0.105
r_chiral_restr0.09
r_mcangle_it0.016
r_bond_refined_d0.01
r_mcbond_it0.01
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5410
Nucleic Acid Atoms
Solvent Atoms652
Heterogen Atoms48

Software

Software
Software NamePurpose
HKL-2000data reduction
SCALEPACKdata scaling
SHELXphasing
ARP/wARPphasing
REFMACrefinement