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Structure of the human collapsin response mediator protein-1, a lung cancer suppressor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KCX PDB ENTRIES 1KCX AND 2VM8 experimental model PDB 2VM8 PDB ENTRIES 1KCX AND 2VM8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 PROTEIN SOLUTION AT 10 MG/ML IN 20 MM TRIS-HCL WITH 150 MM NACL, PH 7.5 AND THE WELL SOLUTION (50 MM AMMONIUM SULFATE, 50 MM SODIUM CITRATE, 12-15% PEG 8000) IN A 1:1 RATIO
Crystal Properties Matthews coefficient Solvent content 2.15 42.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.815 α = 90 b = 147.846 β = 94.61 c = 86.023 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 99.6 0.08 18.38 7.3 42140 2 58.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 91.1 0.44 3.3 7.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1KCX AND 2VM8 3.05 39.184 1.39 42140 1176 99.6 0.1754 0.1739 0.1739 0.2271 60.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.9182 2.2684 1.7546 -6.6729
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.043 f_angle_d 1.132 f_chiral_restr 0.073 f_bond_d 0.009 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14530 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data reduction CCP4 phasing PHENIX phasing PHENIX refinement