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Crystal Structure of 3-hydroxydecanoyl-Acyl Carrier Protein Dehydratase (FabA) from Pseudomonas aeruginosa in complex with N- isobutyl-2-(5-(2-thienyl)-1,2-oxazol-3-yl-)methoxy)acetamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FQ9 PDB ENTRY 4FQ9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 PEG MME 5000 13 %, 100 MM SODIUM CITRATE PH 5.0, LITHIUM SULPHATE 0.1 M
Crystal Properties Matthews coefficient Solvent content 3.05 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.9 α = 90 b = 143.67 β = 116.51 c = 78 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2012-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 71.83 96.8 0.08 7.5 3 27828 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.76 2.83 98.8 0.42 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4FQ9 2.76 71.83 26426 1399 96.68 0.18483 0.18274 0.1831 0.22451 0.2281 RANDOM 58.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -0.37 1.39 -2.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.942 r_dihedral_angle_4_deg 20.824 r_dihedral_angle_3_deg 16.198 r_dihedral_angle_1_deg 7.868 r_angle_refined_deg 1.387 r_angle_other_deg 1.134 r_chiral_restr 0.085 r_gen_planes_refined 0.012 r_bond_refined_d 0.011 r_gen_planes_other 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.942 r_dihedral_angle_4_deg 20.824 r_dihedral_angle_3_deg 16.198 r_dihedral_angle_1_deg 7.868 r_angle_refined_deg 1.387 r_angle_other_deg 1.134 r_chiral_restr 0.085 r_gen_planes_refined 0.012 r_bond_refined_d 0.011 r_gen_planes_other 0.009 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6431 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing