☰ Navigation Tabs
Crystal structure of S. aureus FabI in complex with NADP and 5-hexyl- 2-(2-methylphenoxy)phenol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ALK PDB ENTRY 4ALK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M NA/K-PHOSPHATE PH 6.5, 47% MPD
Crystal Properties Matthews coefficient Solvent content 2.89 57.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.11 α = 98.02 b = 94.8 β = 112.18 c = 94.57 γ = 97.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 46.4 97.6 0.09 6.1 2 113028 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 96.9 0.35 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ALK 2.35 46.38 107312 5716 97.58 0.15154 0.14835 0.164 0.21188 0.2212 RANDOM 30.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.47 -0.21 1.05 -2.14 -2.49 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.502 r_dihedral_angle_4_deg 19.442 r_dihedral_angle_3_deg 17.141 r_dihedral_angle_1_deg 6.974 r_scangle_it 5.389 r_scbond_it 3.627 r_mcangle_it 1.966 r_angle_refined_deg 1.694 r_mcbond_it 1.171 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.502 r_dihedral_angle_4_deg 19.442 r_dihedral_angle_3_deg 17.141 r_dihedral_angle_1_deg 6.974 r_scangle_it 5.389 r_scbond_it 3.627 r_mcangle_it 1.966 r_angle_refined_deg 1.694 r_mcbond_it 1.171 r_chiral_restr 0.083 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15675 Nucleic Acid Atoms Solvent Atoms 1116 Heterogen Atoms 602
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing