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Crystal structure of the Smoothened CRD, selenomethionine-labeled
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 100 MM HEPES PH7.0, PEG 6000 20%, 10 MM ZNCL2
Crystal Properties Matthews coefficient Solvent content 2.03 38.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.13 α = 90 b = 68.13 β = 90 c = 92.27 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48 99.2 0.1 25.5 26.5 10085
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 92.8 0.92 3.9 23.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.3 30.47 9576 483 98.85 0.23803 0.23586 0.2388 0.28406 0.2864 RANDOM 56.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.1 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.935 r_dihedral_angle_4_deg 19.064 r_dihedral_angle_3_deg 18.166 r_dihedral_angle_1_deg 5.939 r_mcangle_it 2.587 r_scbond_it 2.386 r_mcbond_it 1.654 r_mcbond_other 1.654 r_angle_refined_deg 1.604 r_angle_other_deg 1.258
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.935 r_dihedral_angle_4_deg 19.064 r_dihedral_angle_3_deg 18.166 r_dihedral_angle_1_deg 5.939 r_mcangle_it 2.587 r_scbond_it 2.386 r_mcbond_it 1.654 r_mcbond_other 1.654 r_angle_refined_deg 1.604 r_angle_other_deg 1.258 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1854 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement PHENIX phasing