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Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA X121
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.07M tris-HCl, 0.1M magnesium sulfate, 14% PEG 4000, 15% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.16 43.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.04 α = 90 b = 79.18 β = 90 c = 118.04 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 34.05 99.3 0.082 7.6 3.6 84219 23358 3 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 99.9 0.381 2.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 34.05 22027 1198 98.37 0.17331 0.17061 0.1779 0.2258 0.234 RANDOM 20.833
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.21 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.649 r_dihedral_angle_3_deg 12.936 r_dihedral_angle_4_deg 10.499 r_dihedral_angle_1_deg 6.546 r_sphericity_free 4.699 r_scangle_it 4.51 r_scbond_it 2.961 r_sphericity_bonded 2.609 r_mcangle_it 2.111 r_rigid_bond_restr 1.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.649 r_dihedral_angle_3_deg 12.936 r_dihedral_angle_4_deg 10.499 r_dihedral_angle_1_deg 6.546 r_sphericity_free 4.699 r_scangle_it 4.51 r_scbond_it 2.961 r_sphericity_bonded 2.609 r_mcangle_it 2.111 r_rigid_bond_restr 1.673 r_angle_refined_deg 1.629 r_mcbond_it 1.292 r_angle_other_deg 0.841 r_mcbond_other 0.527 r_chiral_restr 0.102 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1756 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 2
Software Software Software Name Purpose HKL-3000 data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling