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Crystal structure of Thioredoxin from Wuchereria bancrofti at 2.0 Angstrom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 100mM Tris HCL pH 5.6, 200mM NaCl, 24% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.65 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.61 α = 90 b = 112.61 β = 90 c = 162.05 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8123 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 30 97 4.3 35142 2.5 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 27.25 33371 1771 99 0.173 0.17 0.1823 0.218 0.2246 RANDOM 21.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.58 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.484 r_dihedral_angle_3_deg 15.257 r_dihedral_angle_4_deg 6.876 r_dihedral_angle_1_deg 6.76 r_scangle_it 4.862 r_scbond_it 3.387 r_angle_refined_deg 2.015 r_mcangle_it 1.906 r_mcbond_it 1.111 r_angle_other_deg 0.986
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.484 r_dihedral_angle_3_deg 15.257 r_dihedral_angle_4_deg 6.876 r_dihedral_angle_1_deg 6.76 r_scangle_it 4.862 r_scbond_it 3.387 r_angle_refined_deg 2.015 r_mcangle_it 1.906 r_mcbond_it 1.111 r_angle_other_deg 0.986 r_chiral_restr 0.158 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3389 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 27
Software Software Software Name Purpose DNA data collection REFMAC refinement MOSFLM data reduction SCALA data scaling