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HSC70 NBD with Na, Cl and glycerol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BUP PDB entry 2bup
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 0.1 M KCl in Tris, 30%PEG 400, pH 8.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.84 56.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.637 α = 90 b = 102.462 β = 119.8 c = 77.776 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2007-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 48 88 0.063 25 3.2 97171 97171 32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.71 70 0.55 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2bup 1.64 48 97171 5111 88.5 0.20668 0.20501 0.2006 0.23855 0.2334 RANDOM 24.361
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 1.44 -0.89 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.157 r_dihedral_angle_4_deg 18.291 r_dihedral_angle_3_deg 12.619 r_dihedral_angle_1_deg 5.283 r_scangle_it 3.344 r_scbond_it 2.094 r_angle_refined_deg 1.279 r_mcangle_it 1.268 r_mcbond_it 0.735 r_metal_ion_refined 0.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.157 r_dihedral_angle_4_deg 18.291 r_dihedral_angle_3_deg 12.619 r_dihedral_angle_1_deg 5.283 r_scangle_it 3.344 r_scbond_it 2.094 r_angle_refined_deg 1.279 r_mcangle_it 1.268 r_mcbond_it 0.735 r_metal_ion_refined 0.345 r_nbtor_refined 0.299 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.156 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.131 r_chiral_restr 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5916 Nucleic Acid Atoms Solvent Atoms 757 Heterogen Atoms 78
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling