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Crystal structure of R54E mutant of S. aureus Pyruvate carboxylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 294 200 mM ammonium tartrate and 20% (w/v) PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.83 56.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.434 α = 90 b = 256.742 β = 109.33 c = 127.045 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2009-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 93.2 0.125 10.5 4.7 132681 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 85.6 0.447 3.5 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.8 30 142000 125986 6647 93.1 0.197 0.194 0.1924 0.262 0.2558 RANDOM 64.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.06 -1.07 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.374 r_dihedral_angle_3_deg 22.859 r_dihedral_angle_4_deg 20.866 r_dihedral_angle_1_deg 8.354 r_scangle_it 4.287 r_scbond_it 2.594 r_mcangle_it 1.638 r_angle_refined_deg 1.262 r_mcbond_it 0.86 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.374 r_dihedral_angle_3_deg 22.859 r_dihedral_angle_4_deg 20.866 r_dihedral_angle_1_deg 8.354 r_scangle_it 4.287 r_scbond_it 2.594 r_mcangle_it 1.638 r_angle_refined_deg 1.262 r_mcbond_it 0.86 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33943 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 123
Software Software Software Name Purpose REFMAC refinement CNS refinement CBASS data collection DENZO data reduction SCALEPACK data scaling CNS phasing