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Crystal structure of rabbit ryanodine receptor 1 (residues 1-559) disease mutant R45C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XOA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 pH 7.0, EVAPORATION
Crystal Properties Matthews coefficient Solvent content 4.02 69.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.162 α = 90 b = 118.162 β = 90 c = 246.951 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2010-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48 100 5.8 36147 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2XOA 2.5 48 34297 1804 100 0.2597 0.26055 0.25966 0.2598 0.27728 0.2764 RANDOM 20.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.43 0.72 1.43 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.959 r_dihedral_angle_3_deg 15.903 r_dihedral_angle_4_deg 15.433 r_dihedral_angle_1_deg 4.786 r_scangle_it 0.946 r_angle_refined_deg 0.902 r_scbond_it 0.553 r_mcangle_it 0.435 r_mcbond_it 0.226 r_chiral_restr 0.057
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.959 r_dihedral_angle_3_deg 15.903 r_dihedral_angle_4_deg 15.433 r_dihedral_angle_1_deg 4.786 r_scangle_it 0.946 r_angle_refined_deg 0.902 r_scbond_it 0.553 r_mcangle_it 0.435 r_mcbond_it 0.226 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3297 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms
Software Software Software Name Purpose MxDC data collection PHASER phasing REFMAC refinement SCALA data scaling