☰ Navigation Tabs
Complexe of ARNO Sec7 domain with the protein-protein interaction inhibitor N-(4-hydroxy-2,6-dimethylphenyl)benzenesulfonamide at pH 8.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JMI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.1M MgSO4, 18% PEG 5000 MME, 0.1M TRIS- HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.47 α = 90 b = 89.47 β = 90 c = 89.47 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.97240 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 36.55 99.67 40862 38676
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.469 1.508 99.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JMI 1.47 36.55 38676 2044 99.67 0.13531 0.13357 0.1321 0.16807 0.1665 RANDOM 19.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.957 r_dihedral_angle_2_deg 35.211 r_dihedral_angle_4_deg 17.742 r_sphericity_bonded 12.019 r_dihedral_angle_3_deg 11.693 r_dihedral_angle_1_deg 4.658 r_rigid_bond_restr 1.398 r_angle_refined_deg 1.288 r_angle_other_deg 0.963 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.957 r_dihedral_angle_2_deg 35.211 r_dihedral_angle_4_deg 17.742 r_sphericity_bonded 12.019 r_dihedral_angle_3_deg 11.693 r_dihedral_angle_1_deg 4.658 r_rigid_bond_restr 1.398 r_angle_refined_deg 1.288 r_angle_other_deg 0.963 r_chiral_restr 0.076 r_gen_planes_other 0.008 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1582 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement