4MJ9

lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.32911ul 1mM d(TCGGCGCCGA)2, 1ul 4mM rac-Ru(TAP)2(dppz-10-Me)]2+, 6ul 40mM Na cacodylate pH 6.3, 12mM spermine-tetra HCl, 20mM BaCl2, 80mM KCl, 10% 2-methyl-2,4-pentanediol equilibriated against 1ml 35% 2-methyl-2,4-pentanediol , VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.9157.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.27α = 90
b = 42.27β = 90
c = 39.67γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2013-05-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.8856DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.9721.1495.920804208042.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.97198.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)R-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT0.9721.1419713106994.980.08650.086010.090.095640.1RANDOM17.357
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-0.140.28
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free45.644
r_sphericity_bonded13.429
r_long_range_B_refined4.446
r_long_range_B_other2.933
r_angle_refined_deg2.549
r_rigid_bond_restr2.265
r_scangle_other1.722
r_angle_other_deg1.428
r_scbond_it1.273
r_scbond_other1.271
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms202
Solvent Atoms116
Heterogen Atoms54

Software

Software
Software NamePurpose
GDAdata collection
SHELXCDphasing
SHELXEmodel building
REFMACrefinement
XDSdata reduction
Aimlessdata scaling