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Structure of Trypanosoma brucei brucei adenosine kinase (apo)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.8 277 0.1 M Tris, pH 8.8, 60% (v/v) MPD, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 45.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.084 α = 90 b = 60.084 β = 90 c = 192.856 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97630 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 57.36 11649
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 43.9 10989 551 99.5 0.16999 0.16705 0.1746 0.23082 0.2293 RANDOM 36.681
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.48 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.269 r_dihedral_angle_4_deg 17.828 r_dihedral_angle_3_deg 14.126 r_long_range_B_refined 6.697 r_long_range_B_other 6.64 r_dihedral_angle_1_deg 5.901 r_scangle_other 4.996 r_mcangle_it 3.873 r_mcangle_other 3.872 r_scbond_it 3.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.269 r_dihedral_angle_4_deg 17.828 r_dihedral_angle_3_deg 14.126 r_long_range_B_refined 6.697 r_long_range_B_other 6.64 r_dihedral_angle_1_deg 5.901 r_scangle_other 4.996 r_mcangle_it 3.873 r_mcangle_other 3.872 r_scbond_it 3.256 r_scbond_other 3.255 r_mcbond_it 2.546 r_mcbond_other 2.545 r_angle_refined_deg 1.465 r_angle_other_deg 0.822 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2463 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling