☰ Navigation Tabs
Previously de-ionized HEW lysozyme batch crystallized in 0.5 M MnCl2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L PDB ENTRY 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 293 Previously de-ionized lysozyme, no buffer added, 0.5 M MnCl2, pH 4.5, batch crystallization, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.06 40.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.186 α = 90 b = 79.186 β = 90 c = 37.715 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE MAR scanner 345 mm plate 2000-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 27.308 99.9 0.045 8.1 20575 17.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.53 100 0.404 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 193L 1.48 27.308 38160 18522 2005 99.84 0.12492 0.1221 0.1301 0.15117 0.1499 RANDOM 22.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.18 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.321 r_sphericity_free 24.123 r_dihedral_angle_4_deg 23.067 r_dihedral_angle_3_deg 14.452 r_sphericity_bonded 10.644 r_dihedral_angle_1_deg 5.428 r_rigid_bond_restr 2.751 r_scbond_it 2.558 r_mcangle_it 1.939 r_mcbond_it 1.494
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.321 r_sphericity_free 24.123 r_dihedral_angle_4_deg 23.067 r_dihedral_angle_3_deg 14.452 r_sphericity_bonded 10.644 r_dihedral_angle_1_deg 5.428 r_rigid_bond_restr 2.751 r_scbond_it 2.558 r_mcangle_it 1.939 r_mcbond_it 1.494 r_mcbond_other 1.484 r_angle_refined_deg 1.35 r_angle_other_deg 0.851 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement AMoRE phasing CNS refinement HKL-2000 data reduction TRUNCATE data reduction SCALEPACK data scaling HKL-2000 data collection