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Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8 295 PEG 3350, pH 8.0, hanging drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.99 69.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.506 α = 90 b = 66.593 β = 90 c = 127.162 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 mirrors 2013-04-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON OTHER 0.979
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.64 32.23 16227 859 98.91 0.21586 0.2138 0.2236 0.25525 0.2617 RANDOM 72.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -1.68 2.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.198 r_dihedral_angle_4_deg 23.87 r_dihedral_angle_3_deg 20.488 r_dihedral_angle_1_deg 5.763 r_angle_refined_deg 1.539 r_angle_other_deg 1.061 r_chiral_restr 0.078 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.198 r_dihedral_angle_4_deg 23.87 r_dihedral_angle_3_deg 20.488 r_dihedral_angle_1_deg 5.763 r_angle_refined_deg 1.539 r_angle_other_deg 1.061 r_chiral_restr 0.078 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2618 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 36
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction